Publications

Highlighted

Spatial mapping of the total transcriptome by in situ polyadenylation.
McKellar, DW, Mantri, M., Hinchman, M., Parker, J. S. L., Sethupathy, P., Cosgrove, B. D., Vlaminck, I. de.
[Nature Biotechnology, 2022] [bioRxiv, 2022] [github] [pdf]

Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration.
McKellar, DW, Walter, LD, Song, LT, Mantri, M, Wang, MFZ, De Vlaminck, I, Cosgrove, BD
[Communications Biology, 2021] [bioRxiv, 2020] [github] [pdf]

Full list

Preprints

Pre-ciliated tubal epithelial cells are prone to initiation of high-grade serous ovarian carcinoma.
Andrea Flesken-Nikitin, Coulter Q. Ralston, Dah-Jiun Fu, Andrea J. De Micheli, Daryl J. Phuong, Blaine A. Harlan, Amanda P. Armstrong, David McKellar, Sangeeta Ghuwalewala, John C. Schimenti1, Benjamin D. Cosgrove, and Alexander Yu. Nikitin
[bioRxiv, 2023] [pdf]

Published

Hedgehog signaling acts as cell fate determinant during adult tissue repair.
Norris AM, Johnson CD, Zhou LY, Appu A, McKellar DW, Cosgrove BD, Kopinke D
[Nature Communications, 2023] [bioRxiv, 2022] [pdf]

Spatiotemporal transcriptomics reveals pathogenesis of viral myocarditis.
Mantri, M., Hinchman, M. M., McKellar, DW, Z Wang, M. F., L Parker, J. S., de Vlaminck, I.
[Nature Cardiovascular Research, 2022] [bioRxiv, 2021] [pdf]

A Tead1-Apelin axis directs paracrine communication from myogenic to endothelial cells in skeletal muscle.
Lee, U., Stuelsatz, P., Karaz, S., McKellar, DW, Russeil, J., Deak, M., de Vlaminck, I., Lepper, C., Deplancke, B., Cosgrove, B. D., Feige, J. N.
[iScience, 2022] [pdf]

Uncovering transcriptional dark matter via gene annotation independent single-cell RNA sequencing analysis.
Wang, MFZ, Mantri M, Chou S-P, Scuderi GJ, McKellar DW, Butcher JT, Danko CG, De Vlaminck, I.
[Nature Communications, 2021] [bioRxiv, 2020] [github] [pdf]

Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis.
Mantri, M., Scuderi, GJ, Abedini-Nassab, R, Wang, MFZ, McKellar, DW, Shi, H, Grodner, B, Butcher, JT, De Vlaminck, I.
[Nature Communications, 2021] [bioRxiv, 2020] [pdf]