Publications

Highlighted

Spatial transcriptomics maps host–gut microbiome biogeography at high resolution.
I Ntekas^, L Takayasu^, DW McKellar^, B Grodner, M Hinchman, C Holdener, P Schweitzer, M Sauthoff, Q Shi, L Brito, I de Vlaminck
[Nature Microbiology, 2026] [bioRxiv, 2024] [github] [pdf]

Spatial mapping of the total transcriptome by in situ polyadenylation.
DW McKellar, M Mantri, M Hinchman, JSL Parker, P Sethupathy, BD Cosgrove, I de Vlaminck
[Nature Biotechnology, 2023] [bioRxiv, 2022] [github] [pdf] [Research Briefing]

Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration.
DW McKellar, LD Walter, LT Song, M Mantri, MFZ Wang, I de Vlaminck, BD Cosgrove
[Communications Biology, 2021] [bioRxiv, 2020] [github] [pdf]