Profiles

Highlighted

High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing.
I Ntekas^, L Takayasu^, DW McKellar^, B Grodner, M Hinchman, C Holdener, P Schweitzer, M Sauthoff, Q Shi, L Brito, I de Vlaminck
[bioRxiv, 2024] [github] [pdf]

Spatial mapping of the total transcriptome by in situ polyadenylation.
DW McKellar, M Mantri, M Hinchman, JSL Parker, P Sethupathy, BD Cosgrove, I de Vlaminck
[Nature Biotechnology, 2023] [bioRxiv, 2022] [github] [pdf]

Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration.
DW McKellar, LD Walter, LT Song, M Mantri, MFZ Wang, I de Vlaminck, BD Cosgrove
[Communications Biology, 2021] [bioRxiv, 2020] [github] [pdf]

Full list

Preprints

High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing.
I Ntekas^, L Takayasu^, DW McKellar^, B Grodner, M Hinchman, C Holdener, P Schweitzer, M Sauthoff, Q Shi, L Brito, I de Vlaminck
[bioRxiv, 2024] [github] [pdf]

Published

Pre-ciliated tubal epithelial cells are prone to initiation of high-grade serous ovarian carcinoma.
A Flesken-Nikitin, CQ Ralston, DJ Fu, AJ De Micheli, DJ Phuong, BA Harlan, CS Ashe, AP Armstrong, DW McKellar, S Ghuwalewala, LH Ellison, JC Schimenti, BD Cosgrove, AY Nikitin
[Nature Communications, 2024*] [bioRxiv, 2023] [pdf]

Hedgehog signaling acts as cell fate determinant during adult tissue repair.
AM Norris, CD Johnson, LY Zhou, A Appu, DW McKellar, BD Cosgrove, D Kopinke
[Nature Communications, 2023] [bioRxiv, 2022] [pdf]

Spatial mapping of the total transcriptome by in situ polyadenylation.
DW McKellar, M Mantri, M Hinchman, JSL Parker, P Sethupathy, BD Cosgrove, I de Vlaminck
[Nature Biotechnology, 2022] [bioRxiv, 2022] [github] [pdf]

Spatiotemporal transcriptomics reveals pathogenesis of viral myocarditis.
M Mantri, MM Hinchman, DW McKellar, Z Wang, MF L Parker, I de Vlaminck
[Nature Cardiovascular Research, 2022] [bioRxiv, 2021] [pdf]

A Tead1-Apelin axis directs paracrine communication from myogenic to endothelial cells in skeletal muscle.
U Lee, P Stuelsatz, S Karaz, DW McKellar, J Russeil, M Deak, I de Vlaminck, C Lepper, B Deplancke, BD Cosgrove, JN Feige
[iScience, 2022] [pdf]

Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration.
DW McKellar, LD Walter, LT Song, M Mantri, MFZ Wang, I de Vlaminck, BD Cosgrove
[Communications Biology, 2021] [bioRxiv, 2020] [github] [pdf]

Uncovering transcriptional dark matter via gene annotation independent single-cell RNA sequencing analysis.
MFZ Wang, M Mantri, SP Chou, GJ Scuderi, DW McKellar, JT Butcher, CG Danko, I de Vlaminck
[Nature Communications, 2021] [bioRxiv, 2020] [github] [pdf]

Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis.
M Mantri, GJ Scuderi, R Abedini-Nassab, MFZ Wang, DW McKellar, H Shi, B Grodner, JT Butcher, I de Vlaminck
[Nature Communications, 2021] [bioRxiv, 2020] [pdf]